LightDock Tutorials for previous versions

LightDock Version
< 0.9 (see below)
0.9
0.9.1
0.9.2
0.9.3

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Tutorials here presented are valid for versions of LightDock <0.9.0.

• LightDock basics

Here you can learn the basic principles of LightDock framework, as well as important details that can help you on your modeling.

• Simple protein-protein docking example

A quick guide about how to setup a protein docking simulation with LightDock.

• Complex protein-protein docking with restraints

The use of information to drive the modeling has been extensively demonstrated to increase the success of your simulation.

It is now possible to include data in the form of residue restraints during the optimisation protocol of LightDock.

• Protein-DNA docking example

A quick guide about how to setup a protein-DNA docking simulation with LightDock. We also demonstrate the use of information for modeling protein-DNA interactions.

• Membrane-associated protein docking

A protocol to model membrane-associated protein complexes, making use of an implicit representation of the membrane.

• Accelerating simulations with the LightDock-Rust implementation

A guide about how to compile and setup the new Rust implementation of LightDock which is way faster than the Python version and with a very scarce memory footprint.

• Frequently Asked Questions